The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0285
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 326178
End posion on genome 326262
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position
ttcactatcg
tRNA gene sequence
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTCAGGTCCCTGTGGCGCAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCAtgc
Downstream region at tRNA end position
cacattaact
Secondary structure (Cloverleaf model)
>At0285	Leu	CAG
                   g      Atgc cacattaact
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGCAGGCCTGC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTCAGGTCCCTGTGGCGCAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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