The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0286
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 401005
End posion on genome 401098
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
gtaggtgagg
tRNA gene sequence 
GGGCCCGTAGCTCAGTCAGGTTAGAGCGGCGGCCTTCGGAGCCGTAGGTCGTGGGTTCAA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position 
atcgctcgcc
Secondary structure (Cloverleaf model)
>At0286	Arg	TCG
                   g      GCCA atcgctcgcc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C T G A        A      | | | | |     A
  A         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCAGGTTAGAGCGGCGGCCTTCGGAGCCGTAGGTCGTGGGTTCag
gcaaagccgcccaaAAATCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK