The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0289
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 533740
End posion on genome 533858
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
ccaccacctg
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTCACGCGCGGGTGATCCCGGGTTCGAATC
CCGGCGGGCCCACCA
Downstream region at tRNA end position 
cgcacctcac
Secondary structure (Cloverleaf model)
>At0289	Val	CAC
                   g      ACCA cgcacctcac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTCACGcggctttgcctaagagCGCGGGTG
ATCCCGGGagggcggcgcaacgagccgacccgggaaTTCGAATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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