The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0292
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 876265
End posion on genome 876358
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
gagaccgatg
tRNA gene sequence 
GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGGCCTCCTAAGCCGTAGGTCGTGGGTTCGA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position 
cttgtcttta
Secondary structure (Cloverleaf model)
>At0292	Arg	CCT
                   g      GCCA cttgtcttta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C T G A        A      | | | | |     G
  A         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGGCCTCCTAAGCCGTAGGTCGTGGGTTCag
gcaaagccgcctacGAATCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK