The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0293
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 914187
End posion on genome 914292
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
gtaggggtcg
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCACCA
Downstream region at tRNA end position 
tctttctagc
Secondary structure (Cloverleaf model)
>At0293	Ala	GGC
                   g      ACCA tctttctagc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G *
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGtggtagccccagaaTGCGGGAGAT
CCCGGGagggagacccccgggaaTTCGAATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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