The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0296
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1028707
End posion on genome 1028799
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tgttcagacg
tRNA gene sequence 
GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTAGTGAGGAGGTCCCGGGTTCGAA
TCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
ctcttctgtc
Secondary structure (Cloverleaf model)
>At0296	Thr	GGT
                   g      TCCA ctcttctgtc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    A - T
                  C       G
                  T       A *
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTAatggcgcatccgtcgaGTGAGG
AGGTCCCGGGTTCGAATCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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