The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0300
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1469819
End posion on genome 1469911
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position
gtacgccagg
tRNA gene sequence
GGGCCCGTAGCTCAGTCAGGACAGAGCGGCGGCCTCCGGAGCCGTAGGTCGTGGGTTCAA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position
cctgtcctca
Secondary structure (Cloverleaf model)
>At0300	Arg	CCG
                   g      GCCA cctgtcctca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C T G A        A      | | | | |     A
  A         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCAGGACAGAGCGGCGGCCTCCGGAGCCGTAGGTCGTGGGTTCag
gcaaagccgcccacAAATCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK