The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0301
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1598539
End posion on genome 1598666
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
aaagggcatg
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGTAGGATGCGTGGCTTGGGCCCACGTGACCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
cactctcctc
Secondary structure (Cloverleaf model)
>At0301	Pro	TGG
                   g      ACCA cactctcctc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGACC
                    C - G
                    G - C
                    T - A
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGTAGGATagggcacagccccccaagGCGTGGCTTGGGaggc
gcagcccaagccCCCACGTGACCCCGGGagggagacccccgggaaTTCAAATCCCGGCGG
CCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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