The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0302
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1598752
End posion on genome 1598876
Amino Acid Gln
Anticodon TTG
Upstream region at tRNA start position 
taaagaggcg
tRNA gene sequence 
AGCCCGGTCGTCTAGCGGCCAAGGATGCGGGGCTTTGGACCCCGTGGCCCGGGTTCGAAT
CCCGGCCGGGCTACCA
Downstream region at tRNA end position 
cgctcttact
Secondary structure (Cloverleaf model)
>At0302	Gln	TTG
                   g      ACCA cgctcttact
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTCGTCTAGCGGCCAAcggggaacccggctagGGATGCGGGGCTTTGGatccaa
gggaggagaaACCCCGTGGCCCGGGaggagcaagcccgggaaTTCGAATCCCGGCCGGGC
TACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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