The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0306
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1957505
End posion on genome 1957604
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aaatagaggc
tRNA gene sequence 
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTCGAGATCCCGTCCCCGTTCAGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGtgt
Downstream region at tRNA end position 
caaatttccc
Secondary structure (Cloverleaf model)
>At0306	Ser	CGA
                   c      Gtgt caaatttccc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGTTCAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTCGAGggctaaggcggggatATCCCGT
CCCCGTTCAGGGGGCGTGGGTTCAAATCCCACCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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