The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0307
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 51762
End posion on genome 51637
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
aggagatgta
tRNA gene sequence 
GCCCCGGTAGTCTAGCCCGGTCAAGGATGTGGGCCTTTCGAGCCCATGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
ccacgtcttt
Secondary structure (Cloverleaf model)
>At0307	Glu	TTC
                   a      ACCA ccacgtcttt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        G     TGAC
                    T - A
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGTCTAGCCCGGTCAAagggaggcccgactagGGATGTGGGCCTTatgtacg
ctacaggccaaTCGAGCCCATGACCCGGGTTCAAAaggggagcccctgagagTCCCGGCC
GGGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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