The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0308
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 160958
End posion on genome 160848
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aaaagagata
tRNA gene sequence 
GCCCCGGTAGCTCAGCGTGGTTAGAGCGGCGGGCTGCAGACCCGTAGGTCCCGGGTTCAA
ATCCCGGCCGGGGCTtca
Downstream region at tRNA end position 
gcctttatgg
Secondary structure (Cloverleaf model)
>At0308	Cys	GCA
                   a      Ttca gcctttatgg
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    G C G A        A      | | | | |     A
  T         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCGTGGTTAGagggctaattatccgactagAGCGGCGGGCTGCAGA
CCCGTAGagccgccggcgcggaaGTCCCGGGTTCAAATCCCGGCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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