The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0309
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 168716
End posion on genome 168604
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
cactgcccag
tRNA gene sequence 
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCGCCTCGTAAGCGGGAGGTCCCGGGTTCGA
ATCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
ccgttttaca
Secondary structure (Cloverleaf model)
>At0309	Thr	CGT
                   g      TCCA ccgttttaca
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCCGGTCGGacagcgtcagctgggccaaAGCGCCCGCCTCGTAgg
cactctgccgagacAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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