The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0310
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 320574
End posion on genome 320451
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
aaaggaggcg
tRNA gene sequence 
AGCCCGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAAT
CCCGGCCGGGCTACCA
Downstream region at tRNA end position 
cgtttttaca
Secondary structure (Cloverleaf model)
>At0310	Gln	CTG
                   g      ACCA cgtttttaca
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTCGTCTAGCGGCCAAcggggaacccggctagGGATGCGGGGCTCTGGatccag
ggaggagaaACCCCGTGGCCCGGGaggagcaagcccgggaaTTCGAATCCCGGCCGGGCT
ACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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