The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0311
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 321593
End posion on genome 321489
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
cgaggcgttg
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCACGCGGGTGATCCCGGGTTCGAATC
CCGGCCGGTCCACCA
Downstream region at tRNA end position 
tctttacgca
Secondary structure (Cloverleaf model)
>At0311	Ala	TGC
                   g      ACCA tctttacgca
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     TGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCAagaggcccaggaaCGCGGGTGATC
CCGGGagggagacccccgggaaTTCGAATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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