The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0313
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 402377
End posion on genome 402283
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position
acacccccaa
tRNA gene sequence
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCACCA
Downstream region at tRNA end position
caactctcag
Secondary structure (Cloverleaf model)
>At0313	Ile	GAT
                   a      ACCA caactctcag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T C G       C C G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGagggt
acaccccgggaaTTCAAATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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