The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0315
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 603197
End posion on genome 603113
Amino Acid Leu
Anticodon CAA
Upstream region at tRNA start position 
ttcactatcg
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGCCAAAGGGGCAGGGCTCAAGACCCTGTGGCGTAGGCCTAC
GTGGGTTCAAATCCCACCCCCCGCAtac
Downstream region at tRNA end position 
ccctcctatt
Secondary structure (Cloverleaf model)
>At0315	Leu	CAA
                   g      Atac ccctcctatt
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    C C A A        G     TGGCGTAGGCCTAC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGCCAAAGGGGCAGGGCTCAAGACCCTGTGGCGTAGGCCTAC
GTGGGTTCAAATCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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