The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0317
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 924443
End posion on genome 924328
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
acacctcaag
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGCGCGGGTGATCCCGGGTTCAAATC
CCGGCGGGCCCACCA
Downstream region at tRNA end position 
attcttacac
Secondary structure (Cloverleaf model)
>At0317	Val	GAC
                   g      ACCA attcttacac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGaggacactcggaaCGCGGGTGATC
CCGGGaggacggcgccacgagccgacccgggaaTTCAAATCCCGGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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