The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0318
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 987244
End posion on genome 987115
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
catagacacg
tRNA gene sequence 
GCCCCGGTAGCTCAGCCCGGTCAGAGCGCCCGCCTTGTAAGCGGGCGGCCCCGGGTTCAA
ATCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
ccgttttata
Secondary structure (Cloverleaf model)
>At0318	Thr	TGT
                   g      TCCA ccgttttata
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C A          G     CGGCC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCCGGTCAGacagcggtagctgggccaaAGCGCCCGCCTTGTAgg
cgggccgccgagacAGCGGGCGGCCCCGGGaggggacaccccgggaaTTCAAATCCCGGC
CGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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