The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0319
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1088212
End posion on genome 1088102
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
cccaaaccca
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGTCAGAGCGGCGGGCTGTTAACCCGTAGGTCCCGGGTTCAA
ATCCCGGCGGCGGCGCCA
Downstream region at tRNA end position 
tatttttatt
Secondary structure (Cloverleaf model)
>At0319	Asn	GTT
                   a      GCCA tatttttatt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCCGGTCAGAGCGGCGGGCTGTTAACCCGTAGagccaacggcgcg
gaaGTCCCGGGTTCAAAagggaaacccctgagacTCCCGGCGGCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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