The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0321
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1601212
End posion on genome 1601090
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
ggaaaggaac
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGCGCCGGTGATCCCGGGTTCAA
ATCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
cacctttcta
Secondary structure (Cloverleaf model)
>At0321	Pro	GGG
                   c      ACCA cacctttcta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGaagactccccgcggcaggggt
ctagagaaCGCCGGTGATCCCGGGaggggaaccccgggaaTTCAAATCCCGGCGGCCCCA
CCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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