The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0325
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1883328
End posion on genome 1883217
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
tagcacgtac
tRNA gene sequence 
GGGCCGTTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGCCAGGGGTTCAAA
TCCCCTACGGCCCACCA
Downstream region at tRNA end position 
ctcttctccg
Secondary structure (Cloverleaf model)
>At0325	Trp	CCA
                   c      ACCA ctcttctccg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C
                     T - A          T A
                    T     T C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       A G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGCC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGTTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGagccgccggcgcgg
aaGCCAGGGGTTCAAAagggggaaccccctgagagTCCCCTACGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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