The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0327
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 1897833
End posion on genome 1897727
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gaaacccccg
tRNA gene sequence 
GCCGCCGTAGTCTAGCGGCTAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATC
CCGGCGGCGGCCtcc
Downstream region at tRNA end position 
atatttatca
Secondary structure (Cloverleaf model)
>At0327	His	GTG
                   g      Ctcc atatttatca
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    C       G G A T
      T A          G     TGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGTCTAGCGGCTAGGATacgcccatgcgcctaagGGCGGGTTGTGGTCCCGT
TGACCCGGGTTCAAAaggggaaacccctgggagTCCCGGCGGCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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