The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0328
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 91013
End posion on genome 91127
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
agtaacgtaa
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGTAGGATAAGCGCGGTTCGGGTCCGCGTGATCCCGGGTTCA
AATCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
ctcacacatc
Secondary structure (Cloverleaf model)
>At0328	Pro	CGG
                   a      ACCA ctcacacatc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         |   |                   T T
  G         A T A A
    T A G G        G     TGATC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGTAGGATAgggcttaaagccctctaaAGCGCGGTTCGGGTC
CGCGTGATCCCGGGTTCgcggtagagccggcccacAAATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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