The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0329
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 335212
End posion on genome 335303
Amino Acid Gly
Anticodon TCC
Upstream region at tRNA start position
cacctaaatg
tRNA gene sequence
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTTCCAAGCCGTTGATCCCGGGTTCA
AATCCCGGCCGCCGCAtct
Downstream region at tRNA end position
ttacccccag
Secondary structure (Cloverleaf model)
>At0329	Gly	TCC
                   g      Atct ttacccccag
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T T A        G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A *
                    T C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTTCCAcgccgacggcgaggaaAGCC
GTTGATCCCGGGTTCAAATCCCGGCCGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK