The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0330
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 471455
End posion on genome 471566
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
aaagagctac
tRNA gene sequence 
GCGGCGGTAGTCTAGTCTGGTTAGGATGGCGGCCTCCCAAGCCGTTGATCCCGGGTTCAA
ATCCCGGCCGCCGCAtgt
Downstream region at tRNA end position 
ttccccagac
Secondary structure (Cloverleaf model)
>At0330	Gly	CCC
                   c      Atgt ttccccagac
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C T G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T A          G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTAGTCTAGTCTGGTTtggacagtgggggagttaaagcccactgccccggagtA
GGATGGCGGCCTCCCAAGCCGTTGATCCCGGGTTCAAATCCCGGCCGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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