The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0332
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 543361
End posion on genome 543448
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position
agaagactca
tRNA gene sequence
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTGGAGATCCCGTCCCCGTCTAGGGGGC
CCGGGTTCAAATCCCGGCCCCGGCGCCA
Downstream region at tRNA end position
gtttctgtaa
Secondary structure (Cloverleaf model)
>At0332	Ser	GGA
                   a      GCCA gtttctgtaa
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     A
    G       G C C G       C C G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGTCTAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTGGAGATCCCGTCCCCGTCTAGGGGGC
CCGGGTTCAAATCCCGGCCCCGGCGCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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