The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0335
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 556155
End posion on genome 556276
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
atgcatcaaa
tRNA gene sequence 
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCACCA
Downstream region at tRNA end position 
aatacggatt
Secondary structure (Cloverleaf model)
>At0335	Ile	GAT
                   a      ACCA aatacggatt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T C G       C C G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAgccggccggtcagagACCGGG
AGGTCCCGtcaaccccctcggcggggggttgggatagGGTTCAAATCCCGGCGGGCCCAC
CA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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