The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0336
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 624754
End posion on genome 624857
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position
gatactacag
tRNA gene sequence
GCCGGGGTGGCCGAGCGGCCTAAGGCGCGGGACTCGAGATCCCGTCCCCGTCTAGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGCCA
Downstream region at tRNA end position
ttgccttttt
Secondary structure (Cloverleaf model)
>At0336	Ser	CGA
                   g      GCCA ttgccttttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    C       A G G C
      C T A        G     TCCCCGTCTAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G *
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGCCTAAGGCGCGGGACTCGAGagtagaaatccgggccATCCCG
TCCCCGTCTAGGGGGCGTGGGTTCAAATCCCACCCCCGGCGCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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