The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0337
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 741900
End posion on genome 741997
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position
aaggaaagcg
tRNA gene sequence
GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGGCCTCCTAAGCCGTAGGTCGTGGGTTCAA
ATCCCACCGGGCCCGctc
Downstream region at tRNA end position
tacctttcaa
Secondary structure (Cloverleaf model)
>At0337	Arg	CCT
                   g      Gctc tacctttcaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C T G A        A      | | | | |     A
  A         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGGaggacccagctaggtccgtcgtgCCTCC
TAAGCCGTAGGTCGTGGGTTCAAATCCCACCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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