The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0338
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 806067
End posion on genome 806194
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
agatgtgaga
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTTACACGCGGGTGGTCCCGGGTTCGAATC
CCGGCGGGCCCACCA
Downstream region at tRNA end position 
aatctttcgt
Secondary structure (Cloverleaf model)
>At0338	Val	TAC
                   a      ACCA aatctttcgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTTACAaggcacacccgcaacagcctagga
gCGCGGGTGGTCCCGtcaaccccccgccggggggttgggataaGGTTCGAATCCCGGCGG
GCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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