The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0339
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 806265
End posion on genome 806394
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
agtggaagta
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGTAGGATGCGTGGCTTGGGCCCACGTGATCCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
ttagttttta
Secondary structure (Cloverleaf model)
>At0339	Pro	TGG
                   a      ACCA ttagttttta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGATC
                    C - G
                    G - C
                    T - A
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGTAGGATtgggtctcgccccctgagGCGTGGCTTGGGaccg
atgtcggcgagagCCCACGTGATCCCGGGTTCgcggcggagccggcctaaAAATCCCGGC
GGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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