The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0343
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1424981
End posion on genome 1425078
Amino Acid Arg
Anticodon TCT
Upstream region at tRNA start position
agaagaccaa
tRNA gene sequence
GGGCCCGTAGCTCAGCCTGGATAGAGCGGCGGCCTTCTAAGCCGTAGGTCGTGGGTTCAA
ATCCCATCGGGCCCGCCA
Downstream region at tRNA end position
caagtcttga
Secondary structure (Cloverleaf model)
>At0343	Arg	TCT
                   a      GCCA caagtcttga
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     T A C C C     A
    C C G A        A      + | | | |     A
  T         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    C - G
                  C       A
                  T       A
                    T C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGATAGAGCGGCGGaggaccacaggtccgccgaaCCTTCTAA
GCCGTAGGTCGTGGGTTCAAATCCCATCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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