The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0344
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1678319
End posion on genome 1678403
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position
agaaacagag
tRNA gene sequence
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCAttg
Downstream region at tRNA end position
ttttggcgaa
Secondary structure (Cloverleaf model)
>At0344	Leu	CAG
                   g      Attg ttttggcgaa
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTAGGCCTGC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTCAGGTCCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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