The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0347
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1691338
End posion on genome 1691446
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
ataaaggcaa
tRNA gene sequence 
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCGCCTTGTAAGCGGGAGGTCCCGGGTTCGA
ATCCCGGCCGGGGCTttt
Downstream region at tRNA end position 
tatatcaagt
Secondary structure (Cloverleaf model)
>At0347	Thr	TGT
                   a      Tttt tatatcaagt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCtggggtaacgccccgcgtatGCCTTGTAg
ctgttggcaagacAGCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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