The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0349
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 51892
End posion on genome 51821
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gatgtgtcaa
tRNA gene sequence 
GCCGCCGTAGTCTAGCGGTTAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATC
CCGGCGGCGGCCctt
Downstream region at tRNA end position 
tagctatata
Secondary structure (Cloverleaf model)
>At0349	His	GTG
                   a      Cctt tagctatata
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    T       G G A T
      T A          G     TGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGTCTAGCGGTTAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATC
CCGGCGGCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK