The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0351
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 318551
End posion on genome 318459
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position
aaacatatag
tRNA gene sequence
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGGCCCGGGTTCAAATC
CCGGCGGCCGCACCA
Downstream region at tRNA end position
cctccttgtc
Secondary structure (Cloverleaf model)
>At0351	Phe	GAA
                   g      ACCA cctccttgtc
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     C T C G       C C G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     CGGGC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C *
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACagctcgccgagccttcaaCGGG
CGGGCCCGGGTTCAAATCCCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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