The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0353
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 409898
End posion on genome 409784
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
ataaagcaaa
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGCGCCGGTGATCCCGGGTTCAA
ATCCCGGCGGCCCCActa
Downstream region at tRNA end position 
cctttatagt
Secondary structure (Cloverleaf model)
>At0353	Pro	GGG
                   a      Acta cctttatagt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGCTAGGATtgggcgtagccccctgagGCCGGCCTGGGGaca
aaccccgtagatgccagcaCGCCGGTGATCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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