The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0355
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 431440
End posion on genome 431349
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gacatctacg
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGCGCGGGTGATCCCGGGTTCAAATC
CCGGCGGGCCCActa
Downstream region at tRNA end position 
aatacccaac
Secondary structure (Cloverleaf model)
>At0355	Val	GAC
                   g      Acta aatacccaac
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGATC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTAGGATGCCCaggggcagagccccgcagaaGCCTGACGCGCG
GGTGATCCCGGGTTCAAATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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