The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0356
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 431619
End posion on genome 431501
Amino Acid Lys
Anticodon CTT
Upstream region at tRNA start position 
cttgaatgca
tRNA gene sequence 
GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGGCTCTTAACCCGTAGGTCGTGGGTTCGAA
TCCCACCGGGCCCGcta
Downstream region at tRNA end position 
cgttctctaa
Secondary structure (Cloverleaf model)
>At0356	Lys	CTT
                   a      Gcta cgttctctaa
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
      C G A        A      | | | | |     G
    C       C T C G       G T G G G     C
    T       | | | |                 T T
    G       G A G C
      G T A        G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       A
                    C T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGTAGAGCGGCGGaggacccagtcgggcctgccgagGCTCTT
AggggcggttgccgcccgtagaaACCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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