The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0358
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 459005
End posion on genome 458905
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
agctggtacg
tRNA gene sequence 
GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGGCCTCCGGAGCCGTAGGTCGTGGGTTCAA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position 
gttacgtttt
Secondary structure (Cloverleaf model)
>At0358	Arg	CCG
                   g      GCCA gttacgtttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C T G A        A      | | | | |     A
  A         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGTCAGGATAGAGCGGCGGaggacccagctaggtccgtcgtgCCTCC
GGAGCCGTAGGTCGTGGGTTCAAATCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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