The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0360
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 695709
End posion on genome 695638
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
caagaaacaa
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCAcct
Downstream region at tRNA end position 
ttacggggga
Secondary structure (Cloverleaf model)
>At0360	Ala	GGC
                   a      Acct ttacggggga
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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