The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0361
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 713260
End posion on genome 713145
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
tttctatcct
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGTTAGAGCGGCGGGCTGTTAACCCGTAGGTCCCGGGTTCGA
ATCCCGGCGGCGGCGctt
Downstream region at tRNA end position 
tcgtatttat
Secondary structure (Cloverleaf model)
>At0361	Asn	GTT
                   t      Gctt tcgtatttat
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCCGGTTAGAGCGGCGGaggactcgagcgggtccgccgaaGCTGT
TAACCCGTAGgctgggcttcaggcggaaGTCCCGGGTTCGAATCCCGGCGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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