The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0364
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1020675
End posion on genome 1020581
Amino Acid Arg
Anticodon GCG
Upstream region at tRNA start position
gtaattggga
tRNA gene sequence
GGGCCCGTAGCTCAGCCTGGATGGAGCGGCGGCCTGCGGAGCCGTAGGTCGTGGGTTCAA
ATCCCACCGGGCCCGcta
Downstream region at tRNA end position
gggtaacggc
Secondary structure (Cloverleaf model)
>At0364	Arg	GCG
                   a      Gcta gggtaacggc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     A
  T         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T G          G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    C - G
                  C       A
                  T       G
                    G C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGATGGAGCGGCGGaggacttgtggtccgccgagCCTGCGGA
GCCGTAGGTCGTGGGTTCAAATCCCACCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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