The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0365
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1020887
End posion on genome 1020764
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
ctagacgggg
tRNA gene sequence 
GCCCCGGTAGTCTAGCCCGGTCAAGGATGTGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
ttaattttgt
Secondary structure (Cloverleaf model)
>At0365	Glu	TTC
                   g      ACCA ttaattttgt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        G     TGAC
                    T + G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCgtagccagccggctaccccagCCGGTAGTCTAGCCCGGTCAAGGATGTGGGCaggtg
gctgagaggctaccccataaCTTTCGAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGC
ACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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