The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0366
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1447364
End posion on genome 1447227
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
aattgaaggc
tRNA gene sequence 
GCCCCGGTAGTCTAGCCCGGTCAAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
acctaaactt
Secondary structure (Cloverleaf model)
>At0366	Glu	CTC
                   c      ACCA acctaaactt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCctggcggtggagggggccgtagccagccggctaccccagCCGGTAGTCTAGCCCGGT
CAAGGATGCGGGCCTCataaccgcagggttaggccagTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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