The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0368
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1552530
End posion on genome 1552408
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position
tataagagac
tRNA gene sequence
GCCGGGGTGGCCGAGCGGCCCAAGGCGCGGGACTTGAGATCCCGTCCCCGTCTAGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGCCA
Downstream region at tRNA end position
tatgtatctt
Secondary structure (Cloverleaf model)
>At0368	Ser	TGA
                   c      GCCA tatgtatctt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    C       A G G C
      C C A        G     TCCCCGTCTAGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGCGGCCCAAGGCGgcctgcctctgtgcaggcctgacCGGGACTTGA
GacttagcaagcaATCCCGTCCCCGTCTAGGGGGCGTGGGTTCAAATCCCACCCCCGGCG
CCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK