The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0369
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1575116
End posion on genome 1575027
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
gtaaaaaaga
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGCGCGGGTGGTCCCGGGTTCAAATC
CCGGCGGGCCCAtca
Downstream region at tRNA end position 
tgtgtcttga
Secondary structure (Cloverleaf model)
>At0369	Val	CAC
                   a      Atca tgtgtcttga
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G *
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGcggcttctcgcctgagagCGCGGG
TGGTCCCGGGTTCAAATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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