The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0371
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1695782
End posion on genome 1695674
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
aaagagacta
tRNA gene sequence 
GCCCCGGTAGCTCAGTCCGGCAGAGCGGCGGGCTGCAGACCCGTAGGTCCCGGGTTCAAA
TCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
atgtccgtct
Secondary structure (Cloverleaf model)
>At0371	Cys	GCA
                   a      TCCA atgtccgtct
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      T G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    C       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGTCCGGCAGAGCGGCGGaggaccgccagtccgccgacGCTGCAGgc
tacggcagccACCCGTAGGTCCCGGGTTCAAATCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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