The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0373
Genome IDCP000504
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum islandicum DSM 4184 [CP000504]
Start position on genome 1704246
End posion on genome 1704135
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
gtataacccg
tRNA gene sequence 
AGCCCGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAAT
CCCGGCCGGGCTACCA
Downstream region at tRNA end position 
ttatcttaaa
Secondary structure (Cloverleaf model)
>At0373	Gln	CTG
                   g      ACCA ttatcttaaa
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTCGTCTAGCGGCCAAaggataacccggcttgGGATGCGGGGCTCTGGACagtg
ccggaggcacccacaaCCCGTGGCCCGGGTTCGAATCCCGGCCGGGCTACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK